PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462921758
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 186aa    MW: 20497.8 Da    PI: 10.5065
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462921758genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.82.9e-302100189
                EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                f+kv tpsdv+k++rlv+pk++ae+h             +g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD v F+++  
  462921758   2 FDKVVTPSDVGKLNRLVIPKQHAEKHfplqlpviaaaavSG-ECKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRSA- 99 
                89***************************999999988633.34889*************************************************543. PP

                SE CS
         B3  88 se 89 
                 +
  462921758 100 -G 100
                .3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-291103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-271105No hitNo description
Gene3DG3DSA:2.40.330.105.7E-381113IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-212110IPR003340B3 DNA binding domain
PfamPF023623.4E-272100IPR003340B3 DNA binding domain
PROSITE profilePS5086312.8872112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MFDKVVTPSD VGKLNRLVIP KQHAEKHFPL QLPVIAAAAV SGECKGVLLN FEDAAGKVWR  60
FRYSYWNSSQ SYVLTKGWSR FVKEKGLHAG DAVGFYRSAG KQLFIDCKVR PRTTGAAAFL  120
NAAASPSTVK AVRLFGVDLV TTPTRPASAA PVQEDMMAMN KRPRDFIAAS TPHMFFKKQC  180
IDFALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-49111013117DNA-binding protein RAV1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0996391e-104FP099639.1 Phyllostachys edulis cDNA clone: bphyem117o01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961326.11e-105PREDICTED: AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ8RZX93e-77Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLK3ZDE01e-105K3ZDE0_SETIT; Uncharacterized protein
STRINGSi024576m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-54related to ABI3/VP1 2